While the pressure between the pump and barrel valve at an idle is an indication of several possible problems, it doesn't have much to do with your WOT tuneup. Don't change the main pill to get some certain pressure at idle...it's related (bigger pill, lower pressure) but not the knob to turn. You probably know that, but I hear people doing that all the time so I thought I better mention it. Adjust the idle with the barrel valve hex link.
A bigger pill made your pressure lower, so that makes sense. If you're motor is idling lean, then it isn't getting enough fuel and you'll need to open the barrel valve up and that will lower that pressure you're seeing.
If the pump were configured backwards, it wouldn't be working at all so we know that isn't it. If your nozzles were blocked with debris, your pressure would be very high and the motor lean. Check them! Or the rotor in the barrel valve is not in the correct spot. As long as the main pill is bleeding past a 1-3 PSI check valve, about 7% of your engine size in cubic inches is a reasonable leak down that should run well and be very close.
Some setups (like a blown Hilborn) are meant to run a secondary that will bleed off a bunch of fuel at idle...maybe that system was meant to run one (or needs one) and would bleed off a bunch of that pressure in FRONT of the barrel valve.
Do some calculations to see what the main pill SHOULD be for that pump and those nozzles. You could use the calculator on the FIE website to figure it out. You could call and I can help you with it. You never mentioned how big your motor was, so I'm not able to provide much in the way of numbers for you. There's a questionnaire on the FIE website that allows me to quickly get a good, accurate tuneup calculated. If fuel looks to be right, then looking at ignition would be the next step.
Also, I can't tell you how many 'poor performance/missing/popping/farting problems' in the last year have been TDC issues. Double check your TDC mark with a stop type tool. The balancer hub moving, ignition timing being way out, keys out, cam off, a half dozen different brain-blowing troubleshooting nightmares this last summer all related or found/solved when TDC was checked and found to be WAY out.
Ho, ho, ho,
Spud